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ath1 arabidopsis genechip microarray  (Schmid GmbH)

 
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    Schmid GmbH ath1 arabidopsis genechip microarray
    Ath1 Arabidopsis Genechip Microarray, supplied by Schmid GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/ath1+arabidopsis+genechip+microarray/arabidopsis+ath1+array/pm21988545-75-27-61
    Average 90 stars, based on 1 article reviews
    ath1 arabidopsis genechip microarray - by Bioz Stars, 2026-11
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    Microarray:

    Article Title: Convergence and divergence in gene expression profiles induced by leaf senescence and 27 senescence-promoting hormonal, pathological and environmental stress treatments.
    Article Snippet: .. Genes induced by senescence-promoting hormonal, chemical, pathological and environmental treatments In order to compare the molecular events in leaf senescence processes induced by different senescence-inducing stimuli, the ATH1 Arabidopsis GeneChip microarray (containing 22, 810 probe sets) data available at the NASC (http:// www.arabidopsis.info) and other resources were obtained for analysis of gene expression profiles upon different treatments, including developmental leaf senescence (Schmid et al. 2005); age-induced programmed cell death (PCD) of Arabidopsis suspension cultures (Swidzinski, Sweetlove & Leaver 2002); 3 h treatments with ethylene, methyl jasmonate (MJ), ABA, BR and SA, respectively; 3 h treatments of coldness (4 °C), osmotic stress, salt stress, drought, genotoxic stress, oxidative stress, UV-B, heat and wounding stress, respectively; 1 h H2O2 treatment; 6 h ozone treatment; pathogenic infections with Botrytis cinerea, Phytophthora infestans and Pseudomonas syringea, respectively; 30 day low nitrogen and high glucose; and darkness (Table 1). ..

    Gene Expression:

    Article Title: Convergence and divergence in gene expression profiles induced by leaf senescence and 27 senescence-promoting hormonal, pathological and environmental stress treatments.
    Article Snippet: .. Genes induced by senescence-promoting hormonal, chemical, pathological and environmental treatments In order to compare the molecular events in leaf senescence processes induced by different senescence-inducing stimuli, the ATH1 Arabidopsis GeneChip microarray (containing 22, 810 probe sets) data available at the NASC (http:// www.arabidopsis.info) and other resources were obtained for analysis of gene expression profiles upon different treatments, including developmental leaf senescence (Schmid et al. 2005); age-induced programmed cell death (PCD) of Arabidopsis suspension cultures (Swidzinski, Sweetlove & Leaver 2002); 3 h treatments with ethylene, methyl jasmonate (MJ), ABA, BR and SA, respectively; 3 h treatments of coldness (4 °C), osmotic stress, salt stress, drought, genotoxic stress, oxidative stress, UV-B, heat and wounding stress, respectively; 1 h H2O2 treatment; 6 h ozone treatment; pathogenic infections with Botrytis cinerea, Phytophthora infestans and Pseudomonas syringea, respectively; 30 day low nitrogen and high glucose; and darkness (Table 1). ..

    Suspension:

    Article Title: Convergence and divergence in gene expression profiles induced by leaf senescence and 27 senescence-promoting hormonal, pathological and environmental stress treatments.
    Article Snippet: .. Genes induced by senescence-promoting hormonal, chemical, pathological and environmental treatments In order to compare the molecular events in leaf senescence processes induced by different senescence-inducing stimuli, the ATH1 Arabidopsis GeneChip microarray (containing 22, 810 probe sets) data available at the NASC (http:// www.arabidopsis.info) and other resources were obtained for analysis of gene expression profiles upon different treatments, including developmental leaf senescence (Schmid et al. 2005); age-induced programmed cell death (PCD) of Arabidopsis suspension cultures (Swidzinski, Sweetlove & Leaver 2002); 3 h treatments with ethylene, methyl jasmonate (MJ), ABA, BR and SA, respectively; 3 h treatments of coldness (4 °C), osmotic stress, salt stress, drought, genotoxic stress, oxidative stress, UV-B, heat and wounding stress, respectively; 1 h H2O2 treatment; 6 h ozone treatment; pathogenic infections with Botrytis cinerea, Phytophthora infestans and Pseudomonas syringea, respectively; 30 day low nitrogen and high glucose; and darkness (Table 1). ..



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    <t>Microarray</t> expression of genes in Arabidopsis Col-0 and Ws-2 plants exposed to As stress. (a) Venn diagram of regulated As-responsive genes extracted by comparing microarray probe sets of the 2 Arabidopsis accessions. The number of overlapping and non-overlapping genes early (1.5 to 3 h) after treatment with 100 or 200 μM As is shown. The probe sets were selected on the basis of an adjusted P-value of <0.05 and a >2-fold change in gene expression. The area of the diagram is proportional to the number of genes that are up- or downregulated in response to As stress. To clearly differentiate As-regulated genes in Col-0 from that in Ws-2, the Col-0-specific set contains only those genes with both >2-fold change in abundance (compared with control treatment) in Col-0 and <1.4-fold change in Ws-2. Likewise, the Ws-2-specific set contains genes with both > 2-fold change in abundance in Ws-2 and < 1.4-fold change in Col-0. The general As-regulated gene set contains genes displaying > 2-fold change in abundance in Col-0 or Ws-2 and >1.4-fold change in another accession. (b) Displayed are genes associated with ubiquitin pathways and abiotic stress responses using MapMan software. Both sets of material were harvested from roots tissues treated with or without As stress (100 and 200 μM for Ws-2 and Col-0, respectively). Red and blue signals represent a decrease and increase in transcript abundance, respectively, relative to water-treated control samples. The scale used for coloration of signals (log 2 ratios) is presented. (c) Validation of representative As-induced genes by semi-quantitative RT-PCR analysis. Total RNA was extracted from root tissues of Arabidopsis plants with different accessions with As treatment. The As-treated roots were harvested at 1 and 3 h. The samples were pooled together. The transcript level of actin served as an equal loading control.
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    <t>Microarray</t> expression of genes in Arabidopsis Col-0 and Ws-2 plants exposed to As stress. (a) Venn diagram of regulated As-responsive genes extracted by comparing microarray probe sets of the 2 Arabidopsis accessions. The number of overlapping and non-overlapping genes early (1.5 to 3 h) after treatment with 100 or 200 μM As is shown. The probe sets were selected on the basis of an adjusted P-value of <0.05 and a >2-fold change in gene expression. The area of the diagram is proportional to the number of genes that are up- or downregulated in response to As stress. To clearly differentiate As-regulated genes in Col-0 from that in Ws-2, the Col-0-specific set contains only those genes with both >2-fold change in abundance (compared with control treatment) in Col-0 and <1.4-fold change in Ws-2. Likewise, the Ws-2-specific set contains genes with both > 2-fold change in abundance in Ws-2 and < 1.4-fold change in Col-0. The general As-regulated gene set contains genes displaying > 2-fold change in abundance in Col-0 or Ws-2 and >1.4-fold change in another accession. (b) Displayed are genes associated with ubiquitin pathways and abiotic stress responses using MapMan software. Both sets of material were harvested from roots tissues treated with or without As stress (100 and 200 μM for Ws-2 and Col-0, respectively). Red and blue signals represent a decrease and increase in transcript abundance, respectively, relative to water-treated control samples. The scale used for coloration of signals (log 2 ratios) is presented. (c) Validation of representative As-induced genes by semi-quantitative RT-PCR analysis. Total RNA was extracted from root tissues of Arabidopsis plants with different accessions with As treatment. The As-treated roots were harvested at 1 and 3 h. The samples were pooled together. The transcript level of actin served as an equal loading control.
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    <t>Microarray</t> expression of genes in Arabidopsis Col-0 and Ws-2 plants exposed to As stress. (a) Venn diagram of regulated As-responsive genes extracted by comparing microarray probe sets of the 2 Arabidopsis accessions. The number of overlapping and non-overlapping genes early (1.5 to 3 h) after treatment with 100 or 200 μM As is shown. The probe sets were selected on the basis of an adjusted P-value of <0.05 and a >2-fold change in gene expression. The area of the diagram is proportional to the number of genes that are up- or downregulated in response to As stress. To clearly differentiate As-regulated genes in Col-0 from that in Ws-2, the Col-0-specific set contains only those genes with both >2-fold change in abundance (compared with control treatment) in Col-0 and <1.4-fold change in Ws-2. Likewise, the Ws-2-specific set contains genes with both > 2-fold change in abundance in Ws-2 and < 1.4-fold change in Col-0. The general As-regulated gene set contains genes displaying > 2-fold change in abundance in Col-0 or Ws-2 and >1.4-fold change in another accession. (b) Displayed are genes associated with ubiquitin pathways and abiotic stress responses using MapMan software. Both sets of material were harvested from roots tissues treated with or without As stress (100 and 200 μM for Ws-2 and Col-0, respectively). Red and blue signals represent a decrease and increase in transcript abundance, respectively, relative to water-treated control samples. The scale used for coloration of signals (log 2 ratios) is presented. (c) Validation of representative As-induced genes by semi-quantitative RT-PCR analysis. Total RNA was extracted from root tissues of Arabidopsis plants with different accessions with As treatment. The As-treated roots were harvested at 1 and 3 h. The samples were pooled together. The transcript level of actin served as an equal loading control.
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    <t>Microarray</t> expression of genes in Arabidopsis Col-0 and Ws-2 plants exposed to As stress. (a) Venn diagram of regulated As-responsive genes extracted by comparing microarray probe sets of the 2 Arabidopsis accessions. The number of overlapping and non-overlapping genes early (1.5 to 3 h) after treatment with 100 or 200 μM As is shown. The probe sets were selected on the basis of an adjusted P-value of <0.05 and a >2-fold change in gene expression. The area of the diagram is proportional to the number of genes that are up- or downregulated in response to As stress. To clearly differentiate As-regulated genes in Col-0 from that in Ws-2, the Col-0-specific set contains only those genes with both >2-fold change in abundance (compared with control treatment) in Col-0 and <1.4-fold change in Ws-2. Likewise, the Ws-2-specific set contains genes with both > 2-fold change in abundance in Ws-2 and < 1.4-fold change in Col-0. The general As-regulated gene set contains genes displaying > 2-fold change in abundance in Col-0 or Ws-2 and >1.4-fold change in another accession. (b) Displayed are genes associated with ubiquitin pathways and abiotic stress responses using MapMan software. Both sets of material were harvested from roots tissues treated with or without As stress (100 and 200 μM for Ws-2 and Col-0, respectively). Red and blue signals represent a decrease and increase in transcript abundance, respectively, relative to water-treated control samples. The scale used for coloration of signals (log 2 ratios) is presented. (c) Validation of representative As-induced genes by semi-quantitative RT-PCR analysis. Total RNA was extracted from root tissues of Arabidopsis plants with different accessions with As treatment. The As-treated roots were harvested at 1 and 3 h. The samples were pooled together. The transcript level of actin served as an equal loading control.
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    <t>Microarray</t> expression of genes in Arabidopsis Col-0 and Ws-2 plants exposed to As stress. (a) Venn diagram of regulated As-responsive genes extracted by comparing microarray probe sets of the 2 Arabidopsis accessions. The number of overlapping and non-overlapping genes early (1.5 to 3 h) after treatment with 100 or 200 μM As is shown. The probe sets were selected on the basis of an adjusted P-value of <0.05 and a >2-fold change in gene expression. The area of the diagram is proportional to the number of genes that are up- or downregulated in response to As stress. To clearly differentiate As-regulated genes in Col-0 from that in Ws-2, the Col-0-specific set contains only those genes with both >2-fold change in abundance (compared with control treatment) in Col-0 and <1.4-fold change in Ws-2. Likewise, the Ws-2-specific set contains genes with both > 2-fold change in abundance in Ws-2 and < 1.4-fold change in Col-0. The general As-regulated gene set contains genes displaying > 2-fold change in abundance in Col-0 or Ws-2 and >1.4-fold change in another accession. (b) Displayed are genes associated with ubiquitin pathways and abiotic stress responses using MapMan software. Both sets of material were harvested from roots tissues treated with or without As stress (100 and 200 μM for Ws-2 and Col-0, respectively). Red and blue signals represent a decrease and increase in transcript abundance, respectively, relative to water-treated control samples. The scale used for coloration of signals (log 2 ratios) is presented. (c) Validation of representative As-induced genes by semi-quantitative RT-PCR analysis. Total RNA was extracted from root tissues of Arabidopsis plants with different accessions with As treatment. The As-treated roots were harvested at 1 and 3 h. The samples were pooled together. The transcript level of actin served as an equal loading control.
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    Average 90 stars, based on 1 article reviews
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    ath1 arabidopsis genechip microarray  (Thermo Fisher)
    90
    Thermo Fisher ath1 arabidopsis genechip microarray
    <t>Microarray</t> expression of genes in Arabidopsis Col-0 and Ws-2 plants exposed to As stress. (a) Venn diagram of regulated As-responsive genes extracted by comparing microarray probe sets of the 2 Arabidopsis accessions. The number of overlapping and non-overlapping genes early (1.5 to 3 h) after treatment with 100 or 200 μM As is shown. The probe sets were selected on the basis of an adjusted P-value of <0.05 and a >2-fold change in gene expression. The area of the diagram is proportional to the number of genes that are up- or downregulated in response to As stress. To clearly differentiate As-regulated genes in Col-0 from that in Ws-2, the Col-0-specific set contains only those genes with both >2-fold change in abundance (compared with control treatment) in Col-0 and <1.4-fold change in Ws-2. Likewise, the Ws-2-specific set contains genes with both > 2-fold change in abundance in Ws-2 and < 1.4-fold change in Col-0. The general As-regulated gene set contains genes displaying > 2-fold change in abundance in Col-0 or Ws-2 and >1.4-fold change in another accession. (b) Displayed are genes associated with ubiquitin pathways and abiotic stress responses using MapMan software. Both sets of material were harvested from roots tissues treated with or without As stress (100 and 200 μM for Ws-2 and Col-0, respectively). Red and blue signals represent a decrease and increase in transcript abundance, respectively, relative to water-treated control samples. The scale used for coloration of signals (log 2 ratios) is presented. (c) Validation of representative As-induced genes by semi-quantitative RT-PCR analysis. Total RNA was extracted from root tissues of Arabidopsis plants with different accessions with As treatment. The As-treated roots were harvested at 1 and 3 h. The samples were pooled together. The transcript level of actin served as an equal loading control.
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    Microarray expression of genes in Arabidopsis Col-0 and Ws-2 plants exposed to As stress. (a) Venn diagram of regulated As-responsive genes extracted by comparing microarray probe sets of the 2 Arabidopsis accessions. The number of overlapping and non-overlapping genes early (1.5 to 3 h) after treatment with 100 or 200 μM As is shown. The probe sets were selected on the basis of an adjusted P-value of <0.05 and a >2-fold change in gene expression. The area of the diagram is proportional to the number of genes that are up- or downregulated in response to As stress. To clearly differentiate As-regulated genes in Col-0 from that in Ws-2, the Col-0-specific set contains only those genes with both >2-fold change in abundance (compared with control treatment) in Col-0 and <1.4-fold change in Ws-2. Likewise, the Ws-2-specific set contains genes with both > 2-fold change in abundance in Ws-2 and < 1.4-fold change in Col-0. The general As-regulated gene set contains genes displaying > 2-fold change in abundance in Col-0 or Ws-2 and >1.4-fold change in another accession. (b) Displayed are genes associated with ubiquitin pathways and abiotic stress responses using MapMan software. Both sets of material were harvested from roots tissues treated with or without As stress (100 and 200 μM for Ws-2 and Col-0, respectively). Red and blue signals represent a decrease and increase in transcript abundance, respectively, relative to water-treated control samples. The scale used for coloration of signals (log 2 ratios) is presented. (c) Validation of representative As-induced genes by semi-quantitative RT-PCR analysis. Total RNA was extracted from root tissues of Arabidopsis plants with different accessions with As treatment. The As-treated roots were harvested at 1 and 3 h. The samples were pooled together. The transcript level of actin served as an equal loading control.

    Journal: BMC Plant Biology

    Article Title: Transcriptome profiling of genes and pathways associated with arsenic toxicity and tolerance in Arabidopsis

    doi: 10.1186/1471-2229-14-94

    Figure Lengend Snippet: Microarray expression of genes in Arabidopsis Col-0 and Ws-2 plants exposed to As stress. (a) Venn diagram of regulated As-responsive genes extracted by comparing microarray probe sets of the 2 Arabidopsis accessions. The number of overlapping and non-overlapping genes early (1.5 to 3 h) after treatment with 100 or 200 μM As is shown. The probe sets were selected on the basis of an adjusted P-value of <0.05 and a >2-fold change in gene expression. The area of the diagram is proportional to the number of genes that are up- or downregulated in response to As stress. To clearly differentiate As-regulated genes in Col-0 from that in Ws-2, the Col-0-specific set contains only those genes with both >2-fold change in abundance (compared with control treatment) in Col-0 and <1.4-fold change in Ws-2. Likewise, the Ws-2-specific set contains genes with both > 2-fold change in abundance in Ws-2 and < 1.4-fold change in Col-0. The general As-regulated gene set contains genes displaying > 2-fold change in abundance in Col-0 or Ws-2 and >1.4-fold change in another accession. (b) Displayed are genes associated with ubiquitin pathways and abiotic stress responses using MapMan software. Both sets of material were harvested from roots tissues treated with or without As stress (100 and 200 μM for Ws-2 and Col-0, respectively). Red and blue signals represent a decrease and increase in transcript abundance, respectively, relative to water-treated control samples. The scale used for coloration of signals (log 2 ratios) is presented. (c) Validation of representative As-induced genes by semi-quantitative RT-PCR analysis. Total RNA was extracted from root tissues of Arabidopsis plants with different accessions with As treatment. The As-treated roots were harvested at 1 and 3 h. The samples were pooled together. The transcript level of actin served as an equal loading control.

    Article Snippet: Microarray analysis involved Affymetrix microarrays (GeneChip Arabidopsis ATH1 genome array) containing 22,810 probe sets on a single chip.

    Techniques: Microarray, Expressing, Software, Quantitative RT-PCR